milxQtRegistrationWindow.h

#ifndef MILXQTRegistrationWindow_H
#define MILXQTRegistrationWindow_H

#include "ui_registrationWindow.h"
#include "milxQtRegistrationAdvancedOptions.h"
#include "milxQtMain.h"
#include "milxQtImage.h"
#include "milxQtFile.h"
#include "milxQtRegistrationAlgos.h"
#include "milxQtRegistration.h"

typedef QList<milxQtImage *> QImageList;

class milxQtRegistrationWindow : public QDialog
{
    Q_OBJECT

public:
    milxQtRegistrationWindow(QWidget * theParent);

    virtual ~milxQtRegistrationWindow();

    void initUI();

    void setAlgo(RegType regType);

    void updateImageListCombo();

    void updateOpenImages();

    bool isImageInList(QString path);

    RegType getCurrentAlgo();

    void updateParameters();

    milxQtRegistrationParams getParamsAffineItk();

    milxQtRegistrationParams getParamsDemonItk();

    milxQtRegistrationParams getParamsF3DNifti();

    milxQtRegistrationParams getParamsAladinNifti();

    milxQtRegistrationParams getParamsElastixAffine();

    milxQtRegistrationParams getParamsElastixBSpline();

    void addImage(milxQtRegistration *);

    void disableUI();

    void enableUI();

    void performRegistrations();

    void workCompleted();

    QString getDefaultOutputFolder();



#ifdef USE_NIFTI_REG
    /*
    \fn milxQtRegistrationWindow::writeSimilarities()
    \brief Write the similarities file
    */
    void writeSimilarities();

    void computeAtlas();
#endif

    QList<milxQtRegistration *> images; 

public slots:
    void accept();

    void reject();

    void referenceComboChange(int newIndex);

    void algoComboChange(int newIndex);

    void advancedOptionsClicked();

    void addImageClicked();

    void selectAllClicked();

    void unselectAllClicked();

    void browseBtnClicked();

    void regComplete();

    void regError(QString functionName, QString errorMsg);

    void clearList();

    void averageComputed();

protected:
    void createConnections();

    Ui::dlgRegistrationWindow ui; 
    milxQtMain *MainWindow; 
    milxQtRegistrationAdvancedOptions *advancedOptionsWindow; 
    bool workInProgress; 
    bool computeAverage; 
    milxQtRegistrationAlgos * regAlgos; 
    QString atlasPath; 
    bool openResults; 
};

#endif // MILXQTRegistrationWindow_H