milxQtRegistration.h

#ifndef MILXQTRegistration_H
#define MILXQTRegistration_H

#include "milxQtRegistrationParams.h"
#include "milxQtRegistration.h"
#include "milxQtRegistrationAlgos.h"
#include "milxQtMain.h"
#include <QObject>
#include <QFile>

class milxQtSimilarities
{
public:
    double nmi; 
    double ssd; 
    double ncc; 
    double lncc; 
};

class milxQtRegistration : public QObject
{
    Q_OBJECT

public:

    milxQtRegistration(QObject * parent, milxQtImage * imageWindow, milxQtMain * mainW);

    milxQtRegistration(QObject * parent, QString, milxQtMain * mainW);

    ~milxQtRegistration();

    QString getPath();

    void setChecked(bool);

    void copyPath(char dest[FILENAME_MAX], QString src);

    bool isChecked();

    void setParams(milxQtRegistrationParams);

    void setRegType(RegType);

    void setReference(milxQtRegistration *);

    void setOutputFolder(QString);

    bool isOpened();

    int startRegistration();

    int createFiles();

    QString createFile(QString pathtemplate);

    void deleteTmpFiles();

    void copyAndReplace(QString src, QString dst);
    void copyAndReplace(milxQtImage *src, QString dst);

    void setOpenResults(bool open);

    milxQtImage* getImage()
    {   return window;    }

    QString getOutputPath();

    QString getOutputFolder();

    QString createAtlasFile();


    QString createSimilarityFileAfter();

    QString createSimilarityFileBefore();


    bool isWorkDone();

    QString getAlgoName();

    void setIsRef(bool);

    void setComputeSimilarities(bool);

    bool isRef();

    qint64 getDuration();


    void reset();

    milxQtRegistrationParams params; 
    milxQtSimilarities similarities_before; 
    milxQtSimilarities similarities_after; 
    milxQtRegistration * reference; 

signals:

    void done();

    void error(QString functionName, QString errorMsg);


public slots:

    void registrationCompleted();

    void algoError(QString functionName, QString errorMsg);

#ifdef USE_NIFTI_REG

    void cpp2defCompleted();

    void similaritiesComputed();
#endif

protected:
    void init(QString);

    milxQtImage * window; 
    bool openedImage; 
    bool openResults; 
    QString path; 
    QString outputFolder; 
    bool checked; 
    bool workDone; 
    bool isRefImg; 
    RegType type; 
    milxQtRegistrationAlgos * regAlgos; 
    milxQtMain *MainWindow; 

    // Statistics
    qint64 startTime; 
    qint64 stopTime; 

    bool computeSimilarities; 

};

#endif // MILXQTRegistration_H